But was there really such a chance? Hopefully someone more versed in the history will correct me if I'm wrong, but my understanding was that the powder magazine was generally heavily armoured and below the waterline, making it almost impossible to penetrate with a cannonball.
If this is the case, then magazine explosions should be in the game, but in the form of fire reaching it, when the ship is heavily damaged and burning out of control. Decapitating the enemy fleet with a lucky shot should still be possible, but in the form of taking out the enemy admiral, which should be much easier than hitting the magazine, especially if he is standing on the quarterdeck with all his medals on a la Nelson. Maybe you could have a choice of where to have the admiral stand, with a more visible position inspiring the sailors but also exposing him to harm.
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