Most certainly yes. Just make sure that any changes you make to the campaign EDU (the one that is in the data folder right after you install EB) are duplicated in your SP backup and your MP backup. Further, ensure that you have modified any required files either manually or using an installer, to allow the new exe file to run EB for you (there are several tutorials on the forums). I'm using ALX.EXE right now with MP.
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