I misunderstood you. I assumed that you had destroyed the foreign government and repaired your own government. I don't think I've ever seen the buildings in the build list when you destroyed them all and rebuilt. I'm sorry but I don't know what can be happening there.
Install all the permanent fixes. You can then run a validation to see that you've installed them correctly, make sure you download the checklist with fixes when you do.
Never had that mercenary problem. Are you sure you can afford them all? Mercenaries aren't cheap in EB...
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