Having thought about this it may have something to do with the patches. I did the same thing when my game was 1.1 (never tried any actual modding, but managed to launch the game through my mymod.bat file), but as I experienced problems with upgrading to 1.2 I reinstalled the whole game and then tried patching to 1.2 again. It worked, but now I couldn't start the game from my mymod.bat file.
Not sure what use this information is but thought I'd post it.
Thanks for any help. :)
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