Yes, the one included is more recent (EB 1.1) than the one on the site (EB 1.0). The latter does include the unit cards, but these are even more outdated (EB 0.8).
It used to be like that in EB 0.7, but the upgrade to R:TW 1.5 made this system cause crashes. Now the MIC buildings determine what you can recruit, and the governments determine what MICs you can build. First building the highest level of one MIC and then replacing the government to build the highest level of the other is considered an exploit though, as the EB team would make it impossible if they could.
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