Before assigning blame, it would be only fair to at least examine how much choice the average inhabitant of Nagasaki, Hiroshima or Tokyo (as you rightly go on to say) had in their contribution to the war effort.
An interesting modern reflection of your logic is Al-Qaida's assertion that US and allied civilians deserve 9/11 and other atrocities as they have voted in their governments and supposedly have more say in the decisions made by them!
I agree with this, but I guess it's the ghastly novelty and scale of what the 2 bombs did, compared to the tons of (conventional) munitions dropped on e.g. Dresden and Tokyo.
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