I didn't have the EB script 'engaged' for a lack of a better word. But yes I finally did get the Polybian reforms. Some cities show the 'Polybian military Era' after the barracks have been upgraded some places do not. But the units did change.

But thanks for all the help! :) I guess i'm one of those players that get annoyed by the 'adviser' and I shut it off. I hope they keep that in mind for when Europa Barbarorum 2 comes out. Anyone heard any updates about that?