Possible remedy for missing units?

Installed patch, Loaded saved game, Bohemond's Teutonic Order mod (Great mod, Bohemond. Best campaign yet).Everything worked fine but all Teutonic Knights and Order foot soldiers production were missing. Abandoned game, reinstalled original files then installed mod again. Bingo! My Teutonic chums were back.

But as to the rebellion fix, I think that 500 Italian infantry, 800 hobilars and 300 longbowmen popping up in Sweden is a step in the wrong direction.