It might be that your enemies ships are faster and simply escape before your ships can catch them. Try bringing one or two faster ships and make them attack on their own and have your heavy duty ships attack as well. The small ships will catch the quick little things and the heavy ones will be able to engage. What is probably happening is that the ship your attacking excapes the sea way and the Ai replaces it, making it looking like the ship never moved. Next time look at the stats of all the ships.
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