Now, what if the civilians in the area secretly support the bad guys and stay in the area because they know that the government cannot shoot while they are there?
They can simply be afraid and claim this or that, but they will stay there only to "guard" the bad guys. The governement and media cannot read their minds, so what should be done? How can anyone know?

What will PETA do if they hide behind furry sheep?

and last but not least: What would Jesus do?