I'm not quite sure I understand what you want... Am I right that you have made changes to three files, among them the two files the Trivial Script switch around? If so, the correct location to replace those files would be in the actual sp/mp edu backup folders. This is because these locations are the source that the Trivial Script uses to copy files into their respective destination folders. For those who use the Trivial Script, you do not need to copy anything into the destination folders, because that's what the Trivial Script does for you.
Still, for those who do not use the Trivial Script, you may want to put those files directly to the destination.
export_descr_unit.txt goes into RTW/EB/Data.
Rome.lnt goes into RTW/EB/Data/menu.
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