Ancient Name - Modern Name

Corduba - Cordoba (if you look, it's also in MTW. Cordoba Castle)
Massilia - Marseille
Aelisia - Paris
Deva - Chester
Byzantium - Istanbul
Syracuse - I think it's Syracusa
Ancrya - Ankara
Massina (scipii town on sicily) - Messina
Carthage - Tunis (i think)
Patavium - Venice
Alexandria - Alexandria
Damascus - Damascus
Mediolanium - Milan (i think)
I think Lemonum - Lyons
Tingi - Tangei
Chersenosos - Sevastopol
Armenian capital (can't remember it's name - Kutaisi
Kydonia - Iraklion
Tanais - Rostov-na Danu
Larissa - Larisa
Thessalonica - Thessaloniki
Capua - Napoli
City on Corsica - Cagliari
Palma - Palma

That's all i can get. But remember, some of the cities might not be right, as i was looking for cities closest to their ancient counterparts or with similar names, and some of the cities from the former U.S.S.R may have had their names changed, since i was using world map from 1984.