Are you sure you haven't modded some files? 
Since 0.91 at least (probably since 0.9) the triggers are as follows:
Code:
;------------------------------------------
Trigger knight_crusader_vnv_trigger
WhenToTest CharacterTurnEnd
Condition AgentType = priest
and I_CrusadeInProgress
and IsRegionCrusadeTarget
and CharacterReligion catholic
and TimeInRegion > 1
AcquireAncillary knight_crusader chance 33
;------------------------------------------
Code:
;------------------------------------------
Trigger priestinit4
WhenToTest AgentCreated
Condition AgentType = priest
and SettlementBuildingExists >= cathedral
and Trait PriestLevel = 0
Affects PriestLevel 1 Chance 100
Affects NaturalPriestSkill 1 Chance 10
;------------------------------------------
Trigger priestinit4_orthodox
WhenToTest AgentCreated
Condition AgentType = priest
and SettlementBuildingExists >= cathedral_o
and Trait PriestLevel = 0
Affects PriestLevel 1 Chance 100
Affects NaturalPriestSkill 1 Chance 10
;------------------------------------------
Trigger priestinit4b
WhenToTest AgentCreated
Condition AgentType = priest
and SettlementBuildingExists >= jama
Affects NaturalPriestSkill 1 Chance 50
Affects Dogmatic 1 Chance 50
;------------------------------------------
So as you see, muslims cannot get Bishop nor crusader knights.
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