This is where a distinction comes in that not many people are aware of - many of these Iraqi Christians are members of the Roman Catholic Church, but not the Latin Church. Confusingly, you have many churches within a church. Kind of like in the UK where you have four countries within a country.
The Roman Catholic Church is made up of 23 churches. The overwhelming majority of its followers belong to the Latin Church, which is what most of us know as Catholicism - the church of Western Europe and the New World. But there are 22 much smaller churches which are mainly Eastern/Orthodox churches that have chosen to recognise the claims of Papal supremacy. In retaining their status as separate churches within the Roman Catholic Church, they are able to carry out their rituals and worship in their traditional manner (which is more in line with Eastern/Orthodox churches than the Latin Church), while still enjoying communion with the Pope in Rome.
It is to these smaller churches within the Catholic Church that many Iraqi Christians belong. Whether or not it is a majority of Iraqi Christians, I am not sure. Still, those I described above are ultimately Catholics.
I don't agree with PVC's concept of 'Holy War', however within the Protestant schools of thought at least, armed retaliation is fit and proper under certain circumstances, if it is carried out by the civil magistrate and not by the church.
In the sermon on the mount when Jesus told us to turn the other cheek and to love our enemies, it is important to note that he is talking to us in our capacity as private persons. The scripture is equally clear in stating that it is the right - even the duty - of the civil magistrate to wield the sword against those who do evil - and ISIS certainly fit that bill. See Romans 13:
"Let everyone be subject to the governing authorities, for there is no authority except that which God has established. The authorities that exist have been established by God. Consequently, whoever rebels against the authority is rebelling against what God has instituted, and those who do so will bring judgment on themselves. For rulers hold no terror for those who do right, but for those who do wrong. Do you want to be free from fear of the one in authority? Then do what is right and you will be commended. For the one in authority is God’s servant for your good. But if you do wrong, be afraid, for rulers do not bear the sword for no reason. They are God’s servants, agents of wrath to bring punishment on the wrongdoer. Therefore, it is necessary to submit to the authorities, not only because of possible punishment but also as a matter of conscience.
This is also why you pay taxes, for the authorities are God’s servants, who give their full time to governing. Give to everyone what you owe them: If you owe taxes, pay taxes; if revenue, then revenue; if respect, then respect; if honor, then honor."
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